PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04095A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 136aa    MW: 14867 Da    PI: 11.283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04095AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13250455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               +h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   A+++I++Lq
  Oropetium_20150105_04095A  2 SHIAVERNRRRQMNEHLKVLRSLTPAL---YIKRGDQASIIGGAIDFIRELQ 50
                               89*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.32E-11154No hitNo description
PROSITE profilePS5088814.932149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.29E-16167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-14262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-12455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPALYI KRGDQASIIG GAIDFIRELQ QVLESLEARK  60
KRRSSSSSSF SSPSPTPSPR SLLTTASSSS SPNNCKQLVV KELAACCNSP VADVEVKISG  120
SNVLLRTLSR RIPGHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698221e-31EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds.
GenBankKJ7269691e-31KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.14e-62PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-50MUTE_ARATH; Transcription factor MUTE
TrEMBLK3XR977e-62K3XR97_SETIT; Uncharacterized protein
STRINGSi004438m2e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-43bHLH family protein